Similar repositories to COG-UK/datapipe:
COG-UK/datapipe
github
similar
CFSAN-Biostatistics/shigatyper
github
similar
CFSAN-Biostatistics/porerefiner
github
similar
hcdenbakker/GTDB_Kraken
github
similar
phac-nml/ecoli_serotyping
github
similar
phac-nml/biohansel
github
similar
zheminzhou/EToKi
github
similar
CDCgov/datasets-sars-cov-2
github
similar
phe-genomics/variant_definitions
github
similar
phac-nml/staramr
github
similar
artic-network/fieldbioinformatics
github
similar
andersen-lab/Freyja
github
similar
pha4ge/hAMRonization
github
similar
oschwengers/referenceseeker
github
similar
CDCgov/MicrobeTrace
github
similar
nf-core/nanoseq
github
similar
connor-lab/ncov2019-artic-nf
github
similar
tseemann/snp-dists
github
similar
aineniamh/snipit
github
similar
lskatz/mashtree
github
similar
yatisht/usher
github
similar
andersen-lab/ivar
github
similar
snayfach/MIDAS
github
similar
OpenGene/fastv
github
similar
wdecoster/nanopack
github
similar
AdmiralenOla/Scoary
github
similar
tseemann/shovill
github
similar
roblanf/minion_qc
github
similar
assemblerflow/flowcraft
github
similar
Ecogenomics/CheckM
github
similar
CDCgov/SARS-CoV-2_Sequencing
github
similar
cov-lineages/pangolin
github
similar
gamcil/clinker
github
similar
rrwick/Unicycler
github
similar
voutcn/megahit
github
similar
nextflow-io/awesome-nextflow
github
similar
cytoscape/cytoscape
github
similar
samtools/bcftools
github
similar
cov-lineages/pango-designation
github
similar
samtools/hts-specs
github
similar